PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08951_BGI-A2_v1.0
Common NameF383_09456
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 426aa    MW: 48158.9 Da    PI: 8.1517
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08951_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.2e-06730126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                +kt+lC  ++r G+C++  +C+FaHg
  Cotton_A_08951_BGI-A2_v1.0  7 FKTKLCVLYQR-GHCSR-QSCSFAHG 30
                                69*********.*****.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-8535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455632IPR000571Zinc finger, CCCH-type
SMARTSM003560.0082631IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MVERKLFKTK LCVLYQRGHC SRQSCSFAHG DADLRGFSGS YGGKRNFRDG DLRDKLDRRL  60
SPKRRYSPAR YVRDQQISQR YSPLRSIDKK RNQKKKECLD GQSDFPETLK IPNVMEDLVI  120
EGRSTSSTSK SILEDQLKEV RVDIDMLINR KHELETFVEE KVQEAETLTS QIEELDSQLE  180
REKEQCKKIT SRIKKFVKAH NRCSQIEDEL RRSQARLQKS GEQLVLHISG TSGDEENSNV  240
NIVSDGETNH LHTSYPHKVS RGNSSPSKKR LWTNKDTTEG LICDGKVRLA ETVRLGKRSR  300
WSECPSQSNI DKENGSLKNG NSGAVPLASN EKPRKGKKVS VSTSTTDKLN GARSSLSLPF  360
TSMAAHAVDD DDILEVEEEK VEASALAFFL PPPPPICQNG YSQYEGTDRN VDVDSVDEEM  420
VHVDVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479822.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 40
TrEMBLA0A0B0PRL40.0A0A0B0PRL4_G
STRINGVIT_12s0059g02450.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.18e-51C3H family protein